yuifu / millefy
Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
☆29Updated 5 years ago
Alternatives and similar repositories for millefy:
Users that are interested in millefy are comparing it to the libraries listed below
- Differential ATAC-seq toolkit☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- interactive plots for differential expression analysis☆32Updated last month
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 8 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ☆21Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- iread☆24Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- BAGEL software☆27Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month