Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
☆30Dec 23, 2019Updated 6 years ago
Alternatives and similar repositories for millefy
Users that are interested in millefy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 7 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Jun 26, 2026Updated last week
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆84Jun 9, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆16Jul 9, 2024Updated last year
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- RNA-Seq Mutation Detection☆28Mar 3, 2026Updated 4 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- kallisto index tag extractor☆19Jul 6, 2019Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- ☆15Apr 26, 2023Updated 3 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RcisTarget: Transcription factor binding motif enrichment☆49Mar 4, 2024Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 3 months ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Feb 3, 2023Updated 3 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆34Jul 11, 2025Updated 11 months ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 9 months ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago