☆32Feb 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for snpR
Users that are interested in snpR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- ☆12Feb 16, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- ☆17Oct 7, 2024Updated last year
- Population genetic simulations in R☆63Jan 28, 2026Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- ☆17Mar 2, 2024Updated 2 years ago
- An Interactive Desktop Platform for Drawing Gene Structure and Protein Architecture☆23Aug 8, 2025Updated 7 months ago
- GONE: Scripts, programs and an example data set☆52Jul 20, 2025Updated 8 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Likelihood-based Selective Sweep Detection☆41Oct 12, 2023Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Tutorials on phylogenetic and phylogenomic inference☆395Sep 13, 2023Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago
- ☆18Feb 15, 2024Updated 2 years ago
- Effective Computing—Resources for Computational Biologists☆27Apr 17, 2020Updated 5 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 7 months ago
- ☆15Mar 7, 2025Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Oct 12, 2025Updated 5 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Scripts for analysis used during the course☆96Apr 30, 2024Updated last year
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆45Nov 1, 2025Updated 4 months ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Scripts to handle NGS data and other biological data☆22Jan 24, 2024Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated last month
- ☆12Jun 12, 2023Updated 2 years ago