Alternatives and similar repositories for snpR

Users that are interested in snpR are comparing it to the libraries listed below

• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• bodkan / admixr
  An R interface for the ADMIXTOOLS software
  ☆34Updated 2 weeks ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 4 months ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆21Updated this week
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆31Updated 6 months ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for performing and teaching population genomic analyses
  ☆19Updated 3 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆68Updated last month
• ANGSD / NgsRelate
  ☆44Updated 8 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated 2 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆17Updated 3 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆43Updated 6 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆16Updated 5 months ago
• GenisGE / evalAdmix
  ☆15Updated last year
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• regevs / gamma_smc
  ☆20Updated last year
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 10 years ago
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated last week
• bodkan / slendr
  Population genetic simulations in R
  ☆61Updated 2 weeks ago