YeoLab / outriggerLinks
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
☆66Updated 5 years ago
Alternatives and similar repositories for outrigger
Users that are interested in outrigger are comparing it to the libraries listed below
Sorting:
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆39Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- ☆38Updated 5 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆75Updated 11 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆88Updated 3 weeks ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆30Updated 6 years ago
- IDR☆31Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- ☆69Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆49Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago