YeoLab / outriggerLinks
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
☆67Updated 5 years ago
Alternatives and similar repositories for outrigger
Users that are interested in outrigger are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆33Updated 2 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆72Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Tutorial Website☆60Updated 4 years ago
- ☆39Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- ☆34Updated 6 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 5 months ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago