YeoLab / outriggerLinks
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
☆67Updated 5 years ago
Alternatives and similar repositories for outrigger
Users that are interested in outrigger are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 2 weeks ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- ☆34Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated last week
- ☆72Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 3 weeks ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- ☆39Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago