YeoLab / outriggerLinks
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
☆66Updated 5 years ago
Alternatives and similar repositories for outrigger
Users that are interested in outrigger are comparing it to the libraries listed below
Sorting:
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- ☆38Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- ☆69Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated this week
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆75Updated 11 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- bradner lab computation pipeline scripts☆54Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- R package containing useful functions for mutational signature analysis☆82Updated last week
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last week
- An R package to time somatic mutations☆62Updated 4 years ago