Xinglab / DARTS
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
☆111Updated last year
Alternatives and similar repositories for DARTS:
Users that are interested in DARTS are comparing it to the libraries listed below
- ☆83Updated 4 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 7 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 8 months ago
- A tool for bigWig files.☆119Updated 6 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆101Updated 3 months ago
- RNA-seq data analysis practical☆60Updated 10 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- ☆83Updated 3 months ago
- ☆61Updated 4 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- ☆117Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆126Updated 7 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆72Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 5 years ago
- microRNA profiling pipeline☆75Updated 3 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆107Updated last month
- ☆37Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆107Updated 5 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆48Updated 7 years ago
- circular RNA analysis toolset☆81Updated 6 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆84Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year