Xinglab / DARTS
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
☆112Updated last year
Alternatives and similar repositories for DARTS
Users that are interested in DARTS are comparing it to the libraries listed below
Sorting:
- ☆116Updated last year
- ☆84Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- A tool for bigWig files.☆119Updated 6 years ago
- circular RNA analysis toolset☆83Updated 8 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆144Updated 3 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆101Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 9 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 8 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 3 weeks ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 5 years ago
- Tools for working with BUS files☆98Updated 3 weeks ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆107Updated 7 months ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- ☆57Updated 4 years ago
- ☆72Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- ☆72Updated 3 years ago
- HiC uniform processing pipeline☆59Updated last year
- RNA-seq data analysis practical☆61Updated 10 years ago
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆50Updated 7 years ago