Deep-learning Augmented RNA-seq analysis of Transcript Splicing
☆114Feb 7, 2024Updated 2 years ago
Alternatives and similar repositories for DARTS
Users that are interested in DARTS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆97Oct 3, 2026Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆115Apr 13, 2026Updated 6 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated last year
- ☆11May 3, 2022Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆307Nov 6, 2025Updated 11 months ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆38May 30, 2026Updated 5 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆14Feb 21, 2023Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆69Sep 12, 2023Updated 3 years ago
- ☆164Jun 29, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆236Jun 1, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Using RNA-Seq data to improve microRNA target prediction accuracy in animals☆11Feb 15, 2026Updated 8 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)☆11May 5, 2021Updated 5 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆21Jun 16, 2022Updated 4 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆16Jul 12, 2019Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 8 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆54Oct 16, 2022Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆17May 11, 2021Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 5 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated 2 months ago
- A deep learning-based tool to identify splice variants☆506Apr 3, 2026Updated 6 months ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 5 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆54Jul 17, 2024Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆85Feb 6, 2019Updated 7 years ago
- ☆19May 5, 2020Updated 6 years ago
- ☆312Aug 10, 2026Updated 2 months ago
- ☆20Sep 28, 2019Updated 7 years ago