Xinglab / DARTSLinks
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
☆115Updated 2 years ago
Alternatives and similar repositories for DARTS
Users that are interested in DARTS are comparing it to the libraries listed below
Sorting:
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- nucleosome calling using ATAC-seq☆110Updated 5 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 6 months ago
- circular RNA analysis toolset☆87Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- ☆120Updated 2 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆114Updated last year
- ☆84Updated 5 years ago
- ☆94Updated 7 months ago
- ☆76Updated 4 years ago
- Microbial analysis in TCGA data☆94Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆120Updated 6 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Updated 6 years ago
- ☆32Updated 6 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆153Updated last year
- Tools for working with BUS files☆102Updated 8 months ago
- AQUAS TF and histone ChIP-seq pipeline☆112Updated 3 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- ☆63Updated 5 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Updated 5 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 9 years ago