Deep-learning Augmented RNA-seq analysis of Transcript Splicing
☆115Feb 7, 2024Updated 2 years ago
Alternatives and similar repositories for DARTS
Users that are interested in DARTS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 8 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆113Apr 13, 2026Updated last month
- A toolset for profiling alternative splicing events in RNA-Seq data.☆94Apr 29, 2026Updated last month
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 10 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 3, 2022Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆304Nov 6, 2025Updated 7 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37May 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- ☆161Mar 16, 2026Updated 2 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆67Sep 12, 2023Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆233Jun 1, 2024Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆23Aug 20, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- bioinformatics R test code☆14May 29, 2026Updated last week
- ☆20Sep 28, 2019Updated 6 years ago
- integrated RNA-seq Analysis Pipeline☆84Feb 6, 2019Updated 7 years ago
- ☆303Mar 4, 2026Updated 3 months ago
- ☆55Aug 1, 2024Updated last year
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆486Apr 5, 2024Updated 2 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- ☆10Jan 27, 2025Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆53Oct 16, 2022Updated 3 years ago
- A deep learning-based tool to identify splice variants☆500Apr 3, 2026Updated 2 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 8 months ago