Xinglab / DARTSLinks
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
☆114Updated last year
Alternatives and similar repositories for DARTS
Users that are interested in DARTS are comparing it to the libraries listed below
Sorting:
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆111Updated 10 months ago
- ☆117Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆84Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆138Updated 10 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆140Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- circular RNA analysis toolset☆84Updated 10 months ago
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- RNA-seq data analysis practical☆61Updated 10 years ago
- ☆87Updated last week
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆91Updated 5 years ago
- Tools for working with BUS files☆100Updated last month
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆73Updated 4 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆108Updated 9 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated this week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆50Updated 7 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Microbial analysis in TCGA data☆91Updated last year
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago