yarden / rnaseqlibLinks
RNA-Seq pipeline
☆35Updated 10 years ago
Alternatives and similar repositories for rnaseqlib
Users that are interested in rnaseqlib are comparing it to the libraries listed below
Sorting:
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 8 months ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Updated 8 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Long read to rMATS☆32Updated 2 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- lncRNA-screen☆25Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year