qinqian / lisaLinks
epigenome analysis to rank transcription factors
☆31Updated 2 years ago
Alternatives and similar repositories for lisa
Users that are interested in lisa are comparing it to the libraries listed below
Sorting:
- ☆59Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆34Updated 6 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆47Updated 8 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- ☆30Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆55Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- ☆35Updated 6 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago