qinqian / lisaView external linksLinks
epigenome analysis to rank transcription factors
☆33Feb 2, 2023Updated 3 years ago
Alternatives and similar repositories for lisa
Users that are interested in lisa are comparing it to the libraries listed below
Sorting:
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 4 years ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 4 years ago
- ☆17Feb 11, 2024Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Jul 8, 2025Updated 7 months ago
- A module for working with snap files in Python☆37May 5, 2020Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Jan 30, 2019Updated 7 years ago
- ☆33Nov 9, 2022Updated 3 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago
- ☆12Feb 6, 2024Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 4 years ago
- Gain biological insights using LLM.☆16Jan 26, 2026Updated 3 weeks ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Oct 17, 2025Updated 3 months ago
- ☆14Jun 4, 2023Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆301Mar 6, 2023Updated 2 years ago
- SCRAT: Single-Cell Regulome Analysis Tool☆15Apr 4, 2020Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆144Apr 5, 2024Updated last year
- Parse command-line arguments and simple variable interpolation☆17Feb 6, 2026Updated last week
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆19Jan 6, 2026Updated last month
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 6 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆38Updated this week
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- ☆19Feb 17, 2021Updated 4 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Gene expression time-series extrapolation for heterogeneous data☆19Apr 29, 2023Updated 2 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Nov 15, 2018Updated 7 years ago
- ☆19Apr 6, 2023Updated 2 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 8 months ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 4 years ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 2 years ago