qinqian / lisaLinks
epigenome analysis to rank transcription factors
☆33Updated 3 years ago
Alternatives and similar repositories for lisa
Users that are interested in lisa are comparing it to the libraries listed below
Sorting:
- ☆59Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated 3 weeks ago
- ☆34Updated 6 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- ☆63Updated 5 years ago
- ☆56Updated 5 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆82Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- ☆48Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- ☆69Updated 7 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆46Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- ☆43Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆23Updated 8 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago