Alternatives and similar repositories for functional-annotation

Users that are interested in functional-annotation are comparing it to the libraries listed below

• FarmGTEx / PigGTEx-Pipeline-v0
  ☆32Updated last year
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆21Updated 3 years ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 9 months ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆34Updated 4 months ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 5 years ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆26Updated 4 months ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• GuoliangLi-HZAU / BatMeth2
  BS-seq analysis pipeline
  ☆40Updated 2 years ago
• chensole / bioinformatics
  ☆14Updated 4 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆26Updated 3 months ago
• BioinfoUNIBA / REDItools2
  ☆59Updated 3 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆23Updated 2 months ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• hewm2008 / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆14Updated 2 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆55Updated last month
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆19Updated last month
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆56Updated 6 months ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆26Updated 2 years ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆50Updated last year
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆47Updated 2 years ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆63Updated 10 months ago
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago