kernco / functional-annotationLinks
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
☆26Updated 3 years ago
Alternatives and similar repositories for functional-annotation
Users that are interested in functional-annotation are comparing it to the libraries listed below
Sorting:
- ☆34Updated 5 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 3 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 6 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Updated 6 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Updated 4 months ago
- ☆16Updated 3 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Updated 3 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 10 months ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Updated 5 years ago
- MEGAnE☆33Updated 2 years ago
- The cattle Genotype-Tissue Expression atlas v1☆28Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- an efficient Hi-C data processing pipeline☆17Updated last year
- tutorial on pggb☆36Updated last year
- ☆14Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- Software for Quantifying Interspersed Repeat Expression☆64Updated 3 years ago
- Workflow and script for converting genomic coordinates using MUMmer output and CrossMap☆12Updated 7 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- ☆27Updated 3 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- Updated and optimized fork of BSMAP☆23Updated 5 years ago
- Useful bioinformatic scripts☆59Updated last year
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆19Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago