JunyueC / sci-RNA-seq3_pipeline
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
☆41Updated 3 years ago
Alternatives and similar repositories for sci-RNA-seq3_pipeline:
Users that are interested in sci-RNA-seq3_pipeline are comparing it to the libraries listed below
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated this week
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆71Updated 3 years ago
- ☆60Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆59Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- simpler single cell RNAseq data clustering☆40Updated 9 months ago
- ☆60Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- ☆48Updated 4 years ago
- Analysis of Paired-Tag datasets☆39Updated last year
- ☆53Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- scWGCNA☆56Updated 2 years ago
- Mouse cell atlas☆60Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆51Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- ☆29Updated last year
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆53Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago