Alternatives and similar repositories for sci-RNA-seq3_pipeline:

Users that are interested in sci-RNA-seq3_pipeline are comparing it to the libraries listed below

• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆73Updated last month
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 3 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆70Updated 3 years ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆66Updated 5 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆47Updated 10 months ago
• lessonskit / Single-cell-RNA-sequencing-of-human-kidney
  R-code used for single-cell RNA-Seq analysis of kidney data.
  ☆17Updated 5 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆61Updated last year
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• rpolicastro / scProportionTest
  ☆61Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆70Updated 4 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆42Updated 11 months ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• ggjlab / scHCL
  ☆48Updated 4 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆72Updated 4 months ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆38Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆43Updated 5 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆76Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆77Updated last year
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• cole-trapnell-lab / cicero-release
  ☆56Updated 4 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆60Updated 4 years ago