JunyueC / sci-RNA-seq3_pipelineLinks
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
☆45Updated 4 years ago
Alternatives and similar repositories for sci-RNA-seq3_pipeline
Users that are interested in sci-RNA-seq3_pipeline are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- ☆63Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆74Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 2 weeks ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- ☆50Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated last week
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated last month
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆45Updated last month
- scRNA-seq cell type identification☆43Updated 6 years ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- ☆48Updated 11 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Functional Inference of Gene Regulation☆49Updated last year