JunyueC / sci-RNA-seq3_pipelineLinks
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
☆44Updated 4 years ago
Alternatives and similar repositories for sci-RNA-seq3_pipeline
Users that are interested in sci-RNA-seq3_pipeline are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆63Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- scWGCNA☆61Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆73Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Mouse cell atlas☆61Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- ☆34Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆47Updated 11 months ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 5 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- ☆64Updated 6 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆52Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago