JunyueC / sci-RNA-seq3_pipelineLinks
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
☆43Updated 4 years ago
Alternatives and similar repositories for sci-RNA-seq3_pipeline
Users that are interested in sci-RNA-seq3_pipeline are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆71Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆63Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- ☆48Updated 5 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆59Updated 11 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆33Updated 6 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- ☆47Updated 7 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- ☆49Updated last year
- ☆55Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year