Python HyPhy: Facilitating HyPhy execution and parsing
☆21Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for phyphy
Users that are interested in phyphy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HyPhy tutorials☆11Apr 9, 2018Updated 7 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Dec 15, 2023Updated 2 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 3 weeks ago
- plumage-inspired color palettes for R☆12Aug 21, 2020Updated 5 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 6 months ago
- ☆25Nov 29, 2022Updated 3 years ago
- Utilities for analyzing next generation sequencing data.☆15May 7, 2021Updated 4 years ago
- ggtree version of plotTree.R☆18Nov 12, 2018Updated 7 years ago
- ☆20Jun 15, 2024Updated last year
- ☆11Mar 25, 2019Updated 6 years ago
- Open source short linear motif discovery and sequence analysis☆26Sep 19, 2024Updated last year
- Automatically exported from code.google.com/p/prank-msa☆33Updated this week
- Quality control for phylogenetic analyses☆13Mar 16, 2026Updated last week
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 4 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- Posterior summarisation in Bayesian phylogenetics☆69Sep 27, 2025Updated 5 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- ☆21Apr 14, 2019Updated 6 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Mar 11, 2026Updated last week
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Jul 25, 2025Updated 7 months ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆48Jan 17, 2021Updated 5 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 3 months ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- HyPhy: Hypothesis testing using Phylogenies☆250Feb 27, 2026Updated 3 weeks ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆119Apr 7, 2021Updated 4 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago