Python HyPhy: Facilitating HyPhy execution and parsing
☆21Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for phyphy
Users that are interested in phyphy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 5 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆25Jun 17, 2025Updated last year
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆12Dec 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts for homology and orthology assessment from genomic sequences.☆19Jul 24, 2026Updated last month
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆21Feb 26, 2024Updated 2 years ago
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- ☆11Mar 25, 2019Updated 7 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- ☆20Jun 15, 2024Updated 2 years ago
- plumage-inspired color palettes for R☆12Aug 21, 2020Updated 6 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Utilities for analyzing next generation sequencing data.☆16May 7, 2021Updated 5 years ago
- ggtree version of plotTree.R☆18Nov 12, 2018Updated 7 years ago
- Open source short linear motif discovery and sequence analysis☆29Sep 19, 2024Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 6 years ago
- ☆21Apr 14, 2019Updated 7 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆72Mar 10, 2021Updated 5 years ago
- Quality control for phylogenetic analyses☆13Aug 17, 2026Updated 2 weeks ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 5 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Posterior summarisation in Bayesian phylogenetics☆74Sep 27, 2025Updated 11 months ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 9 years ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆49Jan 17, 2021Updated 5 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated last year
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- HyPhy: Hypothesis testing using Phylogenies☆270Jul 23, 2026Updated last month
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆125Apr 7, 2021Updated 5 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Automatically exported from code.google.com/p/prank-msa☆40Mar 19, 2026Updated 5 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago