sjspielman / phyphyLinks
Python HyPhy: Facilitating HyPhy execution and parsing
☆21Updated 3 years ago
Alternatives and similar repositories for phyphy
Users that are interested in phyphy are comparing it to the libraries listed below
Sorting:
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- ☆26Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- ☆32Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated this week
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- HyPhy standalone analyses☆45Updated 3 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 4 months ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago