piquelab / QuASARLinks
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
☆27Updated 8 years ago
Alternatives and similar repositories for QuASAR
Users that are interested in QuASAR are comparing it to the libraries listed below
Sorting:
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- BigWig and BAM utilities☆99Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated last year
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Updated 2 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆40Updated 7 years ago
- ☆78Updated 11 years ago
- ☆39Updated 4 years ago
- ☆36Updated 6 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago