piquelab / QuASAR
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
☆27Updated 8 years ago
Alternatives and similar repositories for QuASAR:
Users that are interested in QuASAR are comparing it to the libraries listed below
- Genomic Association Tester☆31Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Integrated copy number variation detection toolset☆26Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Codes and Data for FFPEsig manuscript☆16Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆22Updated 4 months ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 6 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆25Updated 11 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- software package for integrative genetic association analysis☆34Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 9 months ago
- DriverPower☆26Updated 3 months ago
- interactive plots for differential expression analysis☆32Updated last month
- Liftover VCF files☆18Updated 8 years ago