Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
☆29Feb 4, 2017Updated 9 years ago
Alternatives and similar repositories for QuASAR
Users that are interested in QuASAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆24Apr 16, 2018Updated 8 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆113Apr 23, 2021Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆43Dec 13, 2021Updated 4 years ago
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Robust Allele Specific Quantification and quality controL☆10Jul 28, 2017Updated 9 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last month
- Interactive eQTL visualizations☆15Dec 12, 2022Updated 3 years ago
- ☆13Oct 2, 2019Updated 7 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 6 years ago
- R package for fast maximum-likelihood estimation of mixture proportions using SQP.☆11Dec 21, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Functional genomics and genome-wide association studies☆70Jul 24, 2018Updated 8 years ago
- A complete tool set for molecular QTL discovery and analysis☆65Apr 16, 2024Updated 2 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 8 years ago
- Preprocessing sequencing data for allele-specific analysis☆14Sep 10, 2026Updated last month
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- Code accompanying "Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx"☆11Oct 17, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 5 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated last year
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 4 years ago
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 4 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 7 months ago
- Upgrade to coloc☆14Aug 1, 2018Updated 8 years ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 11 years ago
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- software package for integrative genetic association analysis☆38Jul 8, 2023Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆76Jan 8, 2025Updated last year
- Regression with summary statistics (RSS) package for R.☆10Oct 29, 2020Updated 6 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated last year
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 9 years ago