piquelab / QuASARLinks
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
☆27Updated 8 years ago
Alternatives and similar repositories for QuASAR
Users that are interested in QuASAR are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
 - Genomic Association Tester☆32Updated 2 years ago
 - SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
 - SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
 - utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
 - chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated last year
 - Mapped QC analysis program☆44Updated 7 years ago
 - (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
 - Exon-exon splice junctions across SRA☆42Updated 4 years ago
 - OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last week
 - Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
 - Fast fusion detection using kallisto☆79Updated 4 months ago
 - gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
 - A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
 - ☆38Updated 4 years ago
 - BigWig and BAM utilities☆98Updated last year
 - RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
 - combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
 - Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
 - Functional genomics and genome-wide association studies☆67Updated 7 years ago
 - Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
 - Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
 - GTEx analysis scripts☆20Updated 8 years ago
 - Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
 - Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
 - JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
 - Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
 - Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
 - Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
 - deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago