dib-lab / elversLinks
(formerly eelpond) an automated RNA-Seq workflow system
☆27Updated 4 years ago
Alternatives and similar repositories for elvers
Users that are interested in elvers are comparing it to the libraries listed below
Sorting:
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated 11 months ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Evolutionary Transcriptomics with R☆45Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- BigWig and BAM utilities☆97Updated last year
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 10 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- A reference viral database (RVDB)☆26Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Fast sequencing data quality metrics☆28Updated 2 weeks ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago