Cellular Genetics Informatics Notebooks
☆24Nov 7, 2025Updated 11 months ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- MERFISH decoding software☆30Aug 16, 2025Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- Biology-centered data-driven quality control for scRNA-seq☆22May 22, 2023Updated 3 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆42Jan 6, 2021Updated 5 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆16Jul 12, 2019Updated 7 years ago
- A factor analysis package☆10Nov 11, 2021Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆27Jan 25, 2022Updated 4 years ago
- ☆18Oct 12, 2019Updated 7 years ago
- ☆14Dec 7, 2021Updated 4 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆19Oct 30, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- ☆29Apr 1, 2025Updated last year
- ☆20Sep 29, 2021Updated 5 years ago
- 该存储库,主要存放根据自己所掌握的NGS差异表达分析技术方法为主,具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 6 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- Milume: explore spatial biology in your notebook. Layer images, cells, and transcripts in 3D, in one reactive widget.☆32Updated this week
- ☆16Feb 12, 2026Updated 8 months ago
- This is a set of codes to perform genomics analysis on Matlab☆10May 26, 2026Updated 5 months ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis pipeline for CUT&TAG data☆25Sep 2, 2020Updated 6 years ago
- ☆16May 13, 2022Updated 4 years ago
- ☆18Apr 17, 2025Updated last year
- A way to track my readings☆13Sep 3, 2026Updated last month
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 5 years ago
- VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumi…☆10Jun 19, 2024Updated 2 years ago
- ☆20Sep 17, 2026Updated last month
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Oct 7, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆15Aug 10, 2022Updated 4 years ago
- Book introducing practical computing concepts to biologists☆11Nov 30, 2024Updated last year
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Oct 6, 2026Updated 3 weeks ago
- This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!☆10Aug 25, 2026Updated 2 months ago