Cellular Genetics Informatics Notebooks
☆24Nov 7, 2025Updated 3 months ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below
Sorting:
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 6 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 7 years ago
- ☆13Nov 9, 2022Updated 3 years ago
- 该存储库,主要存放根据自己所掌握的NGS差异表达分析技术方法为主,具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- ☆18Oct 12, 2019Updated 6 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Feb 23, 2026Updated last week
- ☆18Apr 17, 2025Updated 10 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- ☆47Apr 18, 2020Updated 5 years ago
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- ☆25Aug 5, 2025Updated 6 months ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Mar 11, 2025Updated 11 months ago
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 5 years ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Automated Cell Toolkit☆24Oct 15, 2025Updated 4 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆29Oct 10, 2025Updated 4 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- ☆62Jul 6, 2021Updated 4 years ago
- Running compute-intense parts of BigStitcher distributed☆30Feb 10, 2026Updated 2 weeks ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆32Jul 28, 2020Updated 5 years ago
- ☆33Jul 17, 2021Updated 4 years ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 4 months ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated 9 months ago
- Onboarding materials for the Greene Lab☆32Feb 10, 2026Updated 2 weeks ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆31May 12, 2020Updated 5 years ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆33Feb 10, 2026Updated 2 weeks ago
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated this week