MonashBioinformaticsPlatform / varistranLinks
R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
☆21Updated 4 months ago
Alternatives and similar repositories for varistran
Users that are interested in varistran are comparing it to the libraries listed below
Sorting:
- TOP results by CONfident efFECT Sizes.☆14Updated 9 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 10 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 5 months ago
- Genomic plot in trellis layout☆41Updated last year
- Explore design matrices interactively with R/Shiny☆37Updated last week
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 9 months ago
- Glimma R package☆50Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Representation and manipulation of genomic intervals☆46Updated 2 weeks ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated last week
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- R interface to 'Gos'☆39Updated 2 years ago
- ☆29Updated last year
- A tidy interface for coverage analysis☆30Updated 5 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 2 months ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- ☆10Updated 6 years ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- ☆20Updated 2 months ago