saezlab / FootprintMethods_on_scRNAseqLinks
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
☆27Updated 5 years ago
Alternatives and similar repositories for FootprintMethods_on_scRNAseq
Users that are interested in FootprintMethods_on_scRNAseq are comparing it to the libraries listed below
Sorting:
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆57Updated last year
- cTPnet Package☆25Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 10 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Tumor Immune Single-cell Hub☆21Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 10 months ago
- ☆44Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆26Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated 3 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- SCDC☆45Updated last month
- ☆18Updated 4 years ago
- ☆25Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆59Updated 7 months ago
- ☆55Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ACTIONet single-cell analysis framework☆42Updated 10 months ago