saezlab / FootprintMethods_on_scRNAseqLinks
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
☆27Updated 5 years ago
Alternatives and similar repositories for FootprintMethods_on_scRNAseq
Users that are interested in FootprintMethods_on_scRNAseq are comparing it to the libraries listed below
Sorting:
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆44Updated 3 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 7 months ago
- ☆60Updated last year
- cTPnet Package☆26Updated 3 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- ☆27Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆31Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- This is the official repository for the Human Cell Atlas Heart project.☆31Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆22Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆17Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- ☆60Updated 2 months ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago