saezlab / FootprintMethods_on_scRNAseqLinks
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
☆27Updated 5 years ago
Alternatives and similar repositories for FootprintMethods_on_scRNAseq
Users that are interested in FootprintMethods_on_scRNAseq are comparing it to the libraries listed below
Sorting:
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆26Updated 4 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆22Updated 3 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- ☆44Updated 3 years ago
- ☆58Updated last year
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- cTPnet Package☆25Updated 3 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last month
- ☆25Updated 2 months ago
- scLearn：Learning for single cell assignment☆35Updated 9 months ago
- ☆30Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆17Updated 9 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- ☆18Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- SCDC☆45Updated 3 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago