Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
☆30Mar 2, 2020Updated 6 years ago
Alternatives and similar repositories for FootprintMethods_on_scRNAseq
Users that are interested in FootprintMethods_on_scRNAseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆18Jan 7, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 5 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- Analysis framework for morphological profiling data☆14Updated this week
- CAFU: A Galaxy framework for exploring unmapped RNA-Seq data☆13Dec 12, 2021Updated 4 years ago
- A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).☆21Aug 28, 2017Updated 9 years ago
- Low-dimensional Projection of Single Cell Velocity☆29Aug 26, 2022Updated 4 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆50Dec 12, 2019Updated 6 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- TemporalVAE: dual-objective VAE for time prediction in single cells☆13Sep 13, 2025Updated last year
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆88May 27, 2024Updated 2 years ago
- Robust and scalable single-cell signature scoring☆29Updated this week
- Pareto Task Inference in Python☆23Oct 19, 2026Updated last week
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆25Oct 23, 2026Updated last week
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- ☆20Aug 28, 2026Updated 2 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- ☆17Jun 5, 2019Updated 7 years ago
- ☆10Jul 3, 2018Updated 8 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 5 years ago
- Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)☆11May 5, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Online Homework Management System☆31Mar 27, 2016Updated 10 years ago
- ☆15Jun 27, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆126Jan 22, 2024Updated 2 years ago
- ☆102Aug 12, 2024Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆46Oct 7, 2025Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆155Jan 20, 2023Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year