a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
☆95Oct 5, 2026Updated last week
Alternatives and similar repositories for ClipKIT
Users that are interested in ClipKIT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆92Oct 9, 2026Updated last week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 4 months ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- Inference of Ortholog Groups using Hidden Markov Models☆39Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 7 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 4 months ago
- A genome completeness evaluation tool based on miniprot☆269Oct 7, 2026Updated last week
- ☆33Jul 9, 2024Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 6 months ago
- TSEBRA: Transcript Selector for BRAKER☆52Apr 7, 2026Updated 6 months ago
- Tiberius is a deep learning gene finder.☆143Updated this week
- TD2☆43May 17, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Infering ancestral synteny with hierarchical orthologous groups☆39Jun 26, 2026Updated 3 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆35Jul 13, 2026Updated 3 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆260Jun 25, 2026Updated 3 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆16Sep 16, 2025Updated last year
- High throughput python tool for mining and analysis of gene duplications.☆17Jul 30, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated last week
- ☆140Aug 29, 2024Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆63Oct 27, 2023Updated 2 years ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- ☆43Jun 8, 2023Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆212Nov 23, 2025Updated 10 months ago
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆577Oct 1, 2026Updated 2 weeks ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 6 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 11 months ago
- Align proteins to genomes with splicing and frameshift☆423Jan 5, 2026Updated 9 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆273Updated this week
- spruceup☆25Aug 15, 2025Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆102Oct 9, 2026Updated last week