Alternatives and similar repositories for ClipKIT

Users that are interested in ClipKIT are comparing it to the libraries listed below

• JLSteenwyk / PhyKIT
  a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
  ☆74Updated last month
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆45Updated 2 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆82Updated 2 weeks ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆86Updated 2 years ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆36Updated 6 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆88Updated 2 months ago
• EBI-Metagenomics / mettannotator
  ☆75Updated this week
• BFL-lab / Mfannot
  MFannot is a program for the annotation of mitochondrial and plastid genomes
  ☆22Updated last year
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆122Updated 4 months ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated last year
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• BenoitMorel / GeneRax
  ☆72Updated 3 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆50Updated 7 months ago
• iqtree / iqtree3
  IQ-TREE version 3: software for phylogenetics
  ☆70Updated last month
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆77Updated 11 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆71Updated 4 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆67Updated 2 years ago
• aleimba / bac-genomics-scripts
  Collection of scripts for bacterial genomics
  ☆48Updated 5 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• evolbioinfo / booster
  ☆27Updated 5 years ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆60Updated 5 months ago
• compgenomicslab / TreeProfiler
  tree visualization for tree + annotation data
  ☆40Updated 3 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆44Updated 2 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last week
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆78Updated 5 months ago
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆50Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆61Updated 4 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆76Updated 2 weeks ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆22Updated 6 months ago