a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
☆90May 6, 2026Updated last month
Alternatives and similar repositories for ClipKIT
Users that are interested in ClipKIT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Feb 23, 2026Updated 3 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆87Updated this week
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 4, 2026Updated 2 weeks ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆245Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆33Jul 9, 2024Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆23May 19, 2026Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆39May 12, 2026Updated last month
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆248Jun 5, 2026Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆135Aug 29, 2024Updated last year
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆41Jun 8, 2023Updated 3 years ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 8 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 2 months ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 7 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆61May 17, 2026Updated last month
- spruceup☆25Aug 15, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆211Nov 18, 2022Updated 3 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 4 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- TD2☆41May 17, 2026Updated last month
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 9 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- A grammar of graphics for comparative genomics☆767Feb 23, 2026Updated 3 months ago