CBC-UCONN / Genome_AssemblyLinks
☆24Updated 9 months ago
Alternatives and similar repositories for Genome_Assembly
Users that are interested in Genome_Assembly are comparing it to the libraries listed below
Sorting:
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last month
- ☆44Updated last year
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Updated 2 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- ☆28Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Automatically exported from code.google.com/p/prank-msa☆31Updated 2 months ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Updated 3 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- rhierbaps: R implementation of hierBAPS☆37Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated 3 weeks ago
- Genomic sequence aligner☆33Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 6 months ago