☆24Apr 17, 2025Updated 11 months ago
Alternatives and similar repositories for Genome_Assembly
Users that are interested in Genome_Assembly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated this week
- ☆12Jun 12, 2023Updated 2 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated last month
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Nov 21, 2025Updated 4 months ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 11 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Mar 10, 2026Updated 2 weeks ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- ☆24Apr 22, 2025Updated 11 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 3 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- R package for microbial pangenomics☆24Apr 12, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 weeks ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Assign taxonomy with blast, can be used for qiime☆25Mar 25, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 4 months ago
- RNA-seq, QC and differential analysis pipeline☆17Nov 25, 2025Updated 4 months ago
- pathway based data integration and visualization☆47Mar 28, 2025Updated 11 months ago
- Importing and manipulating Hi-C data in R☆12Jul 17, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 weeks ago
- This repository contains a Python script, heic_to_jpeg.py, designed to convert HEIC files to JPEG format. The script utilizes the Pillow …☆14Dec 22, 2025Updated 3 months ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 3 months ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago