iferres / MLSTarLinks
An easy way of MLSTyping your genomes in R.
☆19Updated 5 years ago
Alternatives and similar repositories for MLSTar
Users that are interested in MLSTar are comparing it to the libraries listed below
Sorting:
- R package for microbial pangenomics☆24Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- ☆22Updated 2 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Updated last month
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 6 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Download assembly files from NCBI☆13Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated this week
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- Create your own PanViz visualizations☆21Updated 8 years ago
- ☆29Updated this week
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Bacterial taxonomy construction and evaluation in R☆15Updated last year
- ☆13Updated 8 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- ☆12Updated last year