hahnlab / CAGEELinks
Computational Analysis of Gene Expression Evolution
☆45Updated 5 months ago
Alternatives and similar repositories for CAGEE
Users that are interested in CAGEE are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Multi-genome synteny block visualization tool☆52Updated last week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Updated 4 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Updated 2 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Updated last month
- Yet another Hi-C scaffolding tool☆22Updated last year
- Sorting and subsampling phylogenomic datasets☆28Updated 10 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- HyPhy standalone analyses☆52Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- ☆29Updated this week
- ☆33Updated last year
- De novo annotation of young retrotransposons☆47Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆45Updated last week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- ☆45Updated 3 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 4 months ago