Alternatives and similar repositories for WGDdetector:

Users that are interested in WGDdetector are comparing it to the libraries listed below

• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 3 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 6 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆30Updated 4 years ago
• zhangfumin / domestication
  ☆17Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• ShiuLab / PseudogenePipeline
  ☆38Updated last year
• wonaya / ParaAT
  ☆9Updated 9 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆38Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 10 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆52Updated this week
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆43Updated last year
• i10labtitech / GINGER
  ☆27Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated 3 weeks ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 6 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 3 months ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 10 months ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆25Updated 2 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year