yongzhiyang2012 / WGDdetectorLinks
☆21Updated 6 years ago
Alternatives and similar repositories for WGDdetector
Users that are interested in WGDdetector are comparing it to the libraries listed below
Sorting:
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated 3 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Updated 8 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆22Updated 7 years ago
- A box of genomics tools☆21Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 10 months ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Updated 6 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last week
- iTAK☆48Updated last year
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆35Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago