hewm2008 / LDBlockShowLinks
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
☆34Updated 3 months ago
Alternatives and similar repositories for LDBlockShow
Users that are interested in LDBlockShow are comparing it to the libraries listed below
Sorting:
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- ☆28Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 2 months ago
- ☆15Updated 3 years ago
- ☆42Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- The cattle Genotype-Tissue Expression atlas v1☆27Updated 2 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 10 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- ☆23Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Scripts to convert between file formats for various analyses☆16Updated 5 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated last month
- The IntroBlocker ancestry inference algorithm☆16Updated 2 years ago
- ☆38Updated 3 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆22Updated 6 years ago
- read and analyse RepeatMasker output☆26Updated 2 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆33Updated 11 months ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago