hewm2008 / Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
☆13Updated 3 years ago
Alternatives and similar repositories for Reseqtools:
Users that are interested in Reseqtools are comparing it to the libraries listed below
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆25Updated 6 months ago
- ☆22Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 9 months ago
- scripts☆15Updated 6 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆36Updated 2 weeks ago
- ☆25Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆20Updated 6 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆17Updated 2 years ago
- ☆28Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated last week
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 2 months ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- HiCAT new project☆27Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- ☆29Updated last month
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- Genome haplotype assembly and assessment method☆12Updated last year
- ☆38Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆34Updated last month
- ☆16Updated 4 months ago
- ☆27Updated 2 years ago