BamDeal: a comprehensive toolkit for bam manipulation
☆55Dec 21, 2022Updated 3 years ago
Alternatives and similar repositories for BamDeal
Users that are interested in BamDeal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆106Aug 27, 2025Updated 9 months ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆112May 23, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆218Jul 5, 2025Updated 11 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated 3 weeks ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆57Jun 5, 2026Updated 2 weeks ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Powerful long read aligner for Ruby☆14May 20, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆172Jun 9, 2026Updated last week
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆83Jun 25, 2025Updated 11 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆154Jun 2, 2026Updated 2 weeks ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 11 months ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Jun 13, 2020Updated 6 years ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 3 years ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆139Jun 3, 2026Updated 2 weeks ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67May 23, 2026Updated 3 weeks ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Program for aligning DNA sequences, a pairwise aligner.☆250May 20, 2026Updated 3 weeks ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆250Dec 16, 2025Updated 6 months ago
- ☆78Jun 12, 2020Updated 6 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago