Alternatives and similar repositories for ITIPs:

Users that are interested in ITIPs are comparing it to the libraries listed below

• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆36Updated 4 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 5 months ago
• baduelp / public
  ☆16Updated 3 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• yywyaoyaowu / SolEvo_PotatoDele
  Use hifi to assembly the Sol genome, and dissecting Sol evo
  ☆15Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• simon19891216 / CentIER
  ☆27Updated 4 months ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• jkimlab / DESCHRAMBLER
  ☆21Updated 10 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• ZhangRenL / geneHapR
  ☆11Updated 4 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆20Updated 8 months ago
• GaoLei-bio / SV
  ☆14Updated 2 years ago
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆25Updated 5 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• ShiuLab / PseudogenePipeline
  ☆36Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆34Updated 2 weeks ago
• lardo / khaper
  ☆27Updated 2 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆19Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆31Updated last month
• JM-SONG / GenomeSyn
  ☆22Updated 2 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆37Updated last year
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆34Updated 4 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year