☆29Jul 20, 2026Updated this week
Alternatives and similar repositories for panhumanpy
Users that are interested in panhumanpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- parallel differential expression for single-cell perturbation sequencing☆25Jul 14, 2026Updated last week
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 10 months ago
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 9 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated 2 weeks ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆85Jul 4, 2026Updated 3 weeks ago
- ☆34Feb 25, 2025Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- A tool for semi-automatic cell type classification☆497May 22, 2026Updated 2 months ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Updated this week
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Apr 13, 2026Updated 3 months ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 14, 2023Updated 2 years ago
- ☆102May 4, 2026Updated 2 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆388Updated this week
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- Convert Seurat objects to 10x Genomics Loupe files.☆158Apr 24, 2026Updated 3 months ago
- ☆49Jan 28, 2026Updated 5 months ago
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated 2 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- reticulate-free single cell format conversion☆219Jul 10, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Automatically annotate cell types, consistently across samples.☆25Updated this week
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 4 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- ☆26Jun 9, 2026Updated last month
- ☆67Sep 13, 2024Updated last year
- Python package to perform enrichment analysis from omics data.☆286Updated this week
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 5 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 3 weeks ago
- ☆51May 18, 2026Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136Updated this week
- Single-cell analysis methods in Rust☆34Jun 26, 2026Updated 3 weeks ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆51Jan 8, 2025Updated last year
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago