Sarah145 / CCPlotRLinks
An R package for visualising cell-cell interactions
☆44Updated 9 months ago
Alternatives and similar repositories for CCPlotR
Users that are interested in CCPlotR are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- R package for Flexible dot plots☆29Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated last month
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- R package for analysing single cell data☆55Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- A database of useful gene signatures for single-cell analysis☆25Updated 2 weeks ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆9Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆17Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- A repository of case studies using ProjecTILs☆14Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- Gene-level general linear mixed model☆21Updated 4 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆12Updated 2 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Code used for muti cellular factor analysis☆14Updated last year
- ☆24Updated 2 years ago
- Querying cellular states and programs by learning representations of gene sets☆12Updated 11 months ago
- Extension of SpatialExperiment with sf☆53Updated 3 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 4 months ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆47Updated last month