Sarah145 / CCPlotRLinks
An R package for visualising cell-cell interactions
☆43Updated last year
Alternatives and similar repositories for CCPlotR
Users that are interested in CCPlotR are comparing it to the libraries listed below
Sorting:
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- R package for Flexible dot plots☆29Updated 3 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- ☆25Updated 3 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 3 months ago
- R package for Bioconductor submission☆37Updated 2 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆12Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆27Updated 3 years ago
- Hierarchical Cell Annotation☆26Updated 9 months ago
- A database of useful gene signatures for single-cell analysis☆25Updated 3 months ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 5 months ago
- Automatic selection of number of principal components☆16Updated 3 years ago