Teichlab / innate_evo
☆12Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for innate_evo
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- ☆53Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆28Updated 10 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Updated 5 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆24Updated 3 years ago
- simpler single cell RNAseq data clustering☆40Updated 6 months ago
- ATAC-seq Quality Control☆23Updated 3 weeks ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- A pipeline for scRNA-seq data analysis☆12Updated 10 months ago
- Helper tools for popscle☆20Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- ☆46Updated last year
- ☆11Updated 4 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 3 months ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago