Allele-Specific Expression by Single-Cell RNA Sequencing
☆31Oct 15, 2020Updated 6 years ago
Alternatives and similar repositories for SCALE
Users that are interested in SCALE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 5 years ago
- ☆19Oct 27, 2021Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆41Apr 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Jul 4, 2017Updated 9 years ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆52Jan 8, 2025Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Oct 13, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19May 15, 2025Updated last year
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Oct 8, 2021Updated 5 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19Mar 11, 2024Updated 2 years ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 5 years ago
- R package for Empirical Bayes Factor Analysis.☆55Dec 4, 2024Updated last year
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago
- Personal diploid genome creation and coordinate conversion☆33Apr 1, 2025Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆18Sep 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools and methods for analysis of single cell assay data in R☆266Oct 17, 2025Updated last year
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 6 months ago
- Tools for working with Variant Call Format files.☆11Jul 2, 2026Updated 4 months ago
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 2 months ago
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago