polygenic scores using variational inference on GWAS summary statistics from multiple cohorts
☆11Dec 7, 2022Updated 3 years ago
Alternatives and similar repositories for vilma
Users that are interested in vilma are comparing it to the libraries listed below
Sorting:
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 3 months ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 4 months ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- Just the leafviz parts of Leafcutter☆15Mar 13, 2026Updated last week
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 4 years ago
- Gene Environment Interaction Estimator☆12Dec 11, 2025Updated 3 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆39Apr 26, 2024Updated last year
- ☆13Feb 2, 2023Updated 3 years ago
- Code for AISTATS 2017 paper on "Conjugate-Computation Variational Inference"☆20Jul 10, 2020Updated 5 years ago
- ☆14Aug 9, 2017Updated 8 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆15Sep 5, 2019Updated 6 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Open Targets python framework for post-GWAS analysis☆54Updated this week
- Python Matrix Factorization Module☆14Mar 13, 2017Updated 9 years ago
- Toolkit for analyzing genetics data from admixed populations☆30Feb 13, 2025Updated last year
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated 11 months ago
- Code and simulations using biologically annotated neural networks☆23Aug 23, 2021Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- GridLMM package☆39Oct 16, 2025Updated 5 months ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 11 years ago
- RSparsePro for robust fine-mapping in the presence of LD mismatch☆15Nov 4, 2024Updated last year
- Curated list of resources for variant prioritization☆14Nov 18, 2025Updated 4 months ago
- ☆32Jun 20, 2025Updated 9 months ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- Refining the impact of genetic evidence on clinical success☆27Jul 14, 2024Updated last year
- KERAS: Multimodal Deep Learning for Semantic Segmentation (RGB, NIR Streams) - multiple architectures☆11Jun 19, 2017Updated 8 years ago
- RSS: Regression with Summary Statistics☆51Sep 16, 2024Updated last year
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 3 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- ☆35Dec 19, 2023Updated 2 years ago
- Workshop materials for R Programming for HPC☆10Mar 7, 2026Updated 2 weeks ago
- Interface to various variant calling formats.☆31Jun 15, 2024Updated last year
- ☆17Mar 11, 2026Updated last week
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆29Updated this week
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 10 months ago