jeffspence / vilma
polygenic scores using variational inference on GWAS summary statistics from multiple cohorts
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for vilma
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 3 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated last month
- Software for linkage disequilibrium graphical models☆15Updated 8 months ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆11Updated 3 years ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆14Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- ☆17Updated 3 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Mean Alterations Using Discrete Expression☆13Updated 7 months ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆23Updated last year
- ☆19Updated 7 years ago
- ☆11Updated last year
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Refining the impact of genetic evidence on clinical success☆22Updated 3 months ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆12Updated 3 years ago
- GWAS gold standards repository☆29Updated 11 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago
- software package for integrative genetic association analysis☆31Updated last year
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 4 months ago
- Data and code for the Effector index☆13Updated 4 years ago
- Older repo for MRLocus. See new website for software usage guide:☆15Updated last year
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆15Updated last week
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- ☆26Updated last year