Teichlab / covid19_MS1Links
Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".
☆14Updated 5 years ago
Alternatives and similar repositories for covid19_MS1
Users that are interested in covid19_MS1 are comparing it to the libraries listed below
Sorting:
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Comparison of single cell normalization strategies☆10Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Scripts for using scanpy☆38Updated last month
- ☆38Updated 2 months ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 9 months ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 6 years ago
- ☆22Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- ☆12Updated last year
- ☆20Updated 8 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Updated 2 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- epigenome analysis to rank transcription factors