Alternatives and similar repositories for covid19_MS1:

Users that are interested in covid19_MS1 are comparing it to the libraries listed below

• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 8 months ago
• cole-trapnell-lab / cicero
  ☆12Updated 11 months ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated 2 years ago
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆32Updated 2 weeks ago
• seasamgo / rescue
  Bootstrap imputation for scRNAseq data
  ☆12Updated 4 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆24Updated last week
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 3 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆28Updated this week
• WeersmaLabIBD / SingleCell
  ☆9Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆23Updated 5 years ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆10Updated 2 months ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• gofflab / developing_mouse_retina_scRNASeq
  10x single cell RNA-seq data from the developing mouse retina
  ☆16Updated 3 years ago
• Shamir-Lab / NEMO
  ☆16Updated 4 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• haniffalab / Single-cell-RNAseq-data-analysis-bundle
  ☆12Updated 2 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆13Updated 3 years ago
• greenelab / CZI-Latent-Assessment
  Supplement to the report in https://greenelab.github.io/czi-hca-report/
  ☆9Updated 6 years ago
• vals / Blog
  ☆37Updated 10 months ago
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆19Updated 4 years ago
• liuqivandy / scRNABatchQC
  ☆11Updated 3 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 3 years ago
• SchulzLab / EpigenomicsTutorial-ISMB2017
  Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
  ☆14Updated 4 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• simslab / cluster_diffex2018
  scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
  ☆19Updated 3 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago