theislab / MetaMapLinks
The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.
☆12Updated 6 years ago
Alternatives and similar repositories for MetaMap
Users that are interested in MetaMap are comparing it to the libraries listed below
Sorting:
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Updated 7 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 7 months ago
- ☆13Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- pipelines to process scRNA-seq data☆12Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Analysis and Visualization of Multiple Gene Set Enrichments☆25Updated 2 months ago
- Software and analysis of metabolism studies across multiple cancer types☆9Updated 7 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Updated 3 years ago
- ☆18Updated 4 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- CircRNA testing and ploting R package☆10Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago