NBISweden / single-cell_sib_scilifelabLinks
SIB/Scilifelab autumn school in single cell omics 2019.
☆22Updated 5 years ago
Alternatives and similar repositories for single-cell_sib_scilifelab
Users that are interested in single-cell_sib_scilifelab are comparing it to the libraries listed below
Sorting:
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Single-cell Case Control Analysis☆52Updated this week
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- scWGCNA☆61Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆43Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- ☆32Updated 9 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆50Updated 5 years ago
- ☆29Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- SCDC☆45Updated 4 months ago