Alternatives and similar repositories for ts_eQTLs:

Users that are interested in ts_eQTLs are comparing it to the libraries listed below

• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆14Updated 2 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 7 months ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆23Updated last year
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 6 months ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 5 months ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 5 years ago
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 2 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆30Updated last year
• fmicompbio / eisaR
  Exon-Intron Split Analysis (EISA) in R
  ☆15Updated last week
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 7 months ago
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated 11 months ago
• karltayeb / cafeh
  ☆11Updated last year
• phillipnicol / scGBM
  Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models
  ☆12Updated last week
• jacobhepkema / scover
  scover
  ☆22Updated last year
• limfuxing / ruvIIInb
  This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…
  ☆18Updated 7 months ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆18Updated 4 months ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆16Updated 4 months ago
• BennyStrobes / surge
  ☆11Updated last year
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 6 months ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆23Updated 6 months ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 4 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago