Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
☆23Oct 9, 2020Updated 6 years ago
Alternatives and similar repositories for ts_eQTLs
Users that are interested in ts_eQTLs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 8 months ago
- ☆21Sep 20, 2021Updated 5 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆18Jan 30, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Learning to Program via Python, and Scientific Python for Programmers course material☆13Jan 23, 2025Updated last year
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated last year
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated 2 months ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆24Apr 16, 2018Updated 8 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Sep 2, 2026Updated last month
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆21Updated this week
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆23May 27, 2021Updated 5 years ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆20Apr 23, 2025Updated last year
- ☆13Feb 2, 2023Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for fast maximum-likelihood estimation of mixture proportions using SQP.☆11Dec 21, 2023Updated 2 years ago
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 5 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- RSparsePro for robust fine-mapping in the presence of LD mismatch☆16Jun 23, 2026Updated 3 months ago
- Software for linkage disequilibrium graphical models☆18Apr 6, 2025Updated last year
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆14Oct 24, 2019Updated 6 years ago
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆17Sep 11, 2025Updated last year
- Robust Allele Specific Quantification and quality controL☆42Dec 13, 2021Updated 4 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆25Sep 5, 2023Updated 3 years ago
- ☆21Feb 17, 2021Updated 5 years ago