AlgoLab / galigLinks
A graph aligner
☆28Updated 9 months ago
Alternatives and similar repositories for galig
Users that are interested in galig are comparing it to the libraries listed below
Sorting:
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Structural variant merging tool☆52Updated 10 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Hitting associations with k-mers☆45Updated 3 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last week
- Master of Pores 2☆23Updated 6 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 5 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 9 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- A dotplot generator for large chromosomes☆42Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- ☆28Updated last month
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆26Updated 4 months ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated last month