AlgoLab / galigLinks
A graph aligner
☆28Updated 11 months ago
Alternatives and similar repositories for galig
Users that are interested in galig are comparing it to the libraries listed below
Sorting:
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated this week
- Population-wide Deletion Calling☆35Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆23Updated 3 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 3 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- Structural variant (SV) analysis tools☆36Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 6 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- a lexicographically-based GTF/GFF sorter☆36Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Easy genomic regions for short-read variant calling☆36Updated 3 weeks ago