AlgoLab / galigLinks
A graph aligner
☆30Updated last year
Alternatives and similar repositories for galig
Users that are interested in galig are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆40Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- ☆28Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆23Updated 8 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆37Updated 9 months ago
- ☆51Updated 6 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago