Software package for estimating fine-scale recombination rate.
☆18Jun 8, 2021Updated 5 years ago
Alternatives and similar repositories for LDhelmet
Users that are interested in LDhelmet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome-wide IM blockwise likelihood estimation toolkit☆19Jun 24, 2024Updated 2 years ago
- Estimate recombination rates from population genetic data☆72Jun 10, 2020Updated 6 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- ☆32Jun 18, 2026Updated last week
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Apr 21, 2026Updated 2 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆64Feb 10, 2026Updated 4 months ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 6 months ago
- Better Alignments with Translated HMMER☆26Jun 15, 2026Updated 2 weeks ago
- ☆18Jul 15, 2021Updated 4 years ago
- ☆11Mar 4, 2025Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 10 months ago
- Tandem Repeat Annotation Library☆25Mar 30, 2023Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 4 months ago
- Drawing functions for Demes demographic models☆25Jun 22, 2026Updated last week
- ASTRAL for PaRalogs and Orthologs☆23Sep 13, 2022Updated 3 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- ULTRA Locates Tandemly Repetitive Areas☆40Oct 23, 2025Updated 8 months ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 3 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆22Jan 19, 2026Updated 5 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 3 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆47May 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- ☆16Mar 26, 2026Updated 3 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆16Jun 21, 2026Updated last week
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year