avaughn271 / AdmixtureBayesLinks
☆21Updated last year
Alternatives and similar repositories for AdmixtureBayes
Users that are interested in AdmixtureBayes are comparing it to the libraries listed below
Sorting:
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- WinPCA. A package for windowed principal component analysis.☆43Updated 2 weeks ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆14Updated 2 years ago
- convert PAF format to CHAIN format☆33Updated 6 months ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated 4 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated 3 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 9 months ago
- Software for ancestry estimation in unrelated individuals☆21Updated last week
- The MafFilter genome alignment processor☆19Updated 6 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Sampling and inference of genealogies with recombination☆47Updated 5 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- FastK based version of Merqury☆28Updated 2 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Scripts for population genetics analysis☆20Updated 3 years ago
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- ☆15Updated 2 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Convert HAL to VG☆23Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆14Updated last year
- Infer demographic history with the Moran model☆50Updated 5 months ago