avaughn271 / AdmixtureBayesLinks
☆21Updated last year
Alternatives and similar repositories for AdmixtureBayes
Users that are interested in AdmixtureBayes are comparing it to the libraries listed below
Sorting:
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆14Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- WinPCA. A package for windowed principal component analysis.☆40Updated 3 weeks ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 9 months ago
- convert PAF format to CHAIN format☆33Updated 6 months ago
- machine learning applications for dadi☆16Updated 9 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 2 years ago
- Sampling and inference of genealogies with recombination☆46Updated 5 months ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated 2 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 3 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆16Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- the pangenome graph evaluator☆29Updated 4 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- ☆13Updated 4 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆28Updated last year
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- The MafFilter genome alignment processor☆19Updated 6 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated 3 weeks ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆55Updated 4 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated 3 months ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year