avaughn271 / AdmixtureBayesLinks
☆20Updated last year
Alternatives and similar repositories for AdmixtureBayes
Users that are interested in AdmixtureBayes are comparing it to the libraries listed below
Sorting:
- WinPCA. A package for windowed principal component analysis.☆38Updated this week
- Sampling and inference of genealogies with recombination☆45Updated 4 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- convert PAF format to CHAIN format☆33Updated 5 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆54Updated 4 months ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆14Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated 2 years ago
- ☆27Updated this week
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆29Updated 2 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last week
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Transfer coordinates across genomes☆23Updated 5 months ago
- Analyze and simulate Pool-Seq time series data☆16Updated 3 years ago
- ☆13Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- the pangenome graph evaluator☆29Updated 4 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆15Updated 6 months ago
- Infer demographic history with the Moran model☆49Updated 4 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year