dfguan / rHAT
Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
☆18Updated 6 years ago
Alternatives and similar repositories for rHAT:
Users that are interested in rHAT are comparing it to the libraries listed below
- Long read to reference genome mapping tool☆13Updated 11 months ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 8 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated 9 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆17Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆28Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 4 months ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- ☆16Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Archived version 1.0.2☆16Updated 5 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated last year
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- tandem repeat finding from erroneous long reads☆15Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago