dfguan / rHATLinks
Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
☆18Updated 6 years ago
Alternatives and similar repositories for rHAT
Users that are interested in rHAT are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- ☆28Updated 7 months ago
- ☆16Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Long read to reference genome mapping tool☆13Updated last year
- ☆17Updated 4 years ago
- ☆35Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago