Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
☆18Feb 17, 2019Updated 7 years ago
Alternatives and similar repositories for rHAT
Users that are interested in rHAT are comparing it to the libraries listed below
Sorting:
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 5 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Aug 27, 2018Updated 7 years ago
- 10x Genomics Reads Simulator☆46Dec 26, 2023Updated 2 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 4 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 9 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 3 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- Analysis toolkit and programming library for k-mer profiles☆31Mar 11, 2021Updated 4 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- ☆15Mar 6, 2018Updated 7 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52May 16, 2022Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 6 years ago