A tool for profiling long STRs from short reads
☆107Apr 19, 2021Updated 5 years ago
Alternatives and similar repositories for GangSTR
Users that are interested in GangSTR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for genome-wide analysis of tandem repeats☆64May 27, 2026Updated last month
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆103Feb 27, 2023Updated 3 years ago
- A tool for estimating repeat sizes☆217Jan 30, 2024Updated 2 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated 11 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 3 months ago
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago
- ☆35Apr 20, 2026Updated 3 months ago
- A suite of tools for detecting expansions of short tandem repeats☆86Jul 6, 2023Updated 3 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆215Jan 16, 2023Updated 3 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for merging Tandem Repeat VCF files☆38Apr 30, 2025Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆23Sep 21, 2021Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- A tool for visualizing alignments of reads in regions containing tandem repeats☆92Apr 20, 2026Updated 3 months ago
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 3 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆54Oct 12, 2023Updated 2 years ago
- Alignment-free detection of structural variations and viral integrations in circulating tumor DNA☆17Nov 11, 2021Updated 4 years ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- Short Tandem Repeat disease loci resource☆29Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆141Jun 10, 2026Updated last month
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆49Updated this week
- Tandem repeat expansion detection or genotyping from long-read alignments☆165Mar 25, 2026Updated 4 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago
- Structural variant caller for low-depth long-read sequencing data☆49Feb 5, 2026Updated 5 months ago