gymreklab / GangSTR
A tool for profiling long STRs from short reads
☆93Updated 3 years ago
Alternatives and similar repositories for GangSTR:
Users that are interested in GangSTR are comparing it to the libraries listed below
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆77Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 2 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ☆39Updated 8 months ago
- ☆109Updated 3 weeks ago
- Same species annotation lift over pipeline.☆96Updated last year
- WisecondorX — An evolved WISECONDOR☆94Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated this week
- ABRA2☆92Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- Jasmine: SV Merging Across Samples☆190Updated 3 weeks ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 7 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- Pangenome-based genome inference☆121Updated this week
- Data and information about the Polaris study☆53Updated 5 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Somatic structural variant caller for long-read data☆53Updated this week
- Read visualizer for structural variants☆81Updated 6 years ago
- Structural Variant Index☆70Updated last month
- NEAT read simulation tools☆97Updated 2 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated 11 months ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago