gymreklab / GangSTR
A tool for profiling long STRs from short reads
☆95Updated 3 years ago
Alternatives and similar repositories for GangSTR:
Users that are interested in GangSTR are comparing it to the libraries listed below
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- WisecondorX — An evolved WISECONDOR☆96Updated 6 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- ABRA2☆92Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆107Updated last month
- Somatic structural variant caller for long-read data☆60Updated last week
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆138Updated 3 weeks ago
- ☆113Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 3 months ago
- Data and information about the Polaris study☆53Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 9 months ago
- BAM Statistics, Feature Counting and Annotation☆147Updated last month
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 3 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 4 months ago
- NEAT read simulation tools☆98Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- ☆39Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Jasmine: SV Merging Across Samples☆207Updated 3 months ago
- ☆82Updated 6 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- A tool for somatic structural variant calling using long reads☆117Updated last week