gymrek-lab / TRToolsLinks
Toolkit for genome-wide analysis of tandem repeats
☆58Updated 4 months ago
Alternatives and similar repositories for TRTools
Users that are interested in TRTools are comparing it to the libraries listed below
Sorting:
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 6 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆51Updated 5 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆50Updated this week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- ☆41Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 3 months ago
- SV genotyping with long reads☆39Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- ☆29Updated 4 years ago
- ☆22Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- python plotly Circos from VCF☆38Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago