tfwillems / HipSTRLinks
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
☆99Updated 2 years ago
Alternatives and similar repositories for HipSTR
Users that are interested in HipSTR are comparing it to the libraries listed below
Sorting:
- ☆95Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Platypus Variant Caller☆108Updated last year
- VCF-kit: Assorted utilities for the variant call format☆130Updated 2 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆91Updated 3 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Segmented HAPlotype Estimation and Imputation Tool☆95Updated 2 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Population-scale genotyping using pangenome graphs☆190Updated 8 months ago