tfwillems / HipSTRLinks
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
☆100Updated 2 years ago
Alternatives and similar repositories for HipSTR
Users that are interested in HipSTR are comparing it to the libraries listed below
Sorting:
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆110Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- An efficient FASTQ manipulation suite☆138Updated 6 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆87Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆94Updated last month
- SV caller for nanopore data☆92Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- NEAT read simulation tools☆101Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆87Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- ☆122Updated 6 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated 3 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 3 weeks ago
- Segmented HAPlotype Estimation and Imputation Tool☆98Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Plotting tools for nanopore methylation data☆94Updated 6 months ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- ☆92Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆85Updated 2 years ago