PapenfussLab / gridssLinks
GRIDSS: the Genomic Rearrangement IDentification Software Suite
☆279Updated 8 months ago
Alternatives and similar repositories for gridss
Users that are interested in gridss are comparing it to the libraries listed below
Sorting:
- Annotation and Ranking of Structural Variation☆286Updated 4 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆207Updated 4 years ago
- Structural variation and indel detection by local assembly☆251Updated 4 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆331Updated 8 months ago
- A tool for estimating repeat sizes☆206Updated 2 years ago
- VarDict☆201Updated 2 years ago
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆201Updated last week
- Various algorithms for analysing genomics data☆264Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆263Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆233Updated 3 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- The nimble & robust variant annotator☆190Updated last year
- Bayesian haplotype-based mutation calling☆323Updated last week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆558Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- A minimap2 frontend for PacBio native data formats☆210Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆226Updated last year
- Structural variant toolkit for VCFs