PapenfussLab / gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
☆266Updated last year
Alternatives and similar repositories for gridss:
Users that are interested in gridss are comparing it to the libraries listed below
- Annotation and Ranking of Structural Variation☆239Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆245Updated 8 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆198Updated 3 years ago
- VarDict☆194Updated last year
- A structural variation pipeline for short-read sequencing☆181Updated this week
- Structural variation and indel detection by local assembly☆241Updated 3 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆308Updated 9 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆204Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆261Updated 3 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 7 months ago
- Toolset for SV simulation, comparison and filtering☆372Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆539Updated 7 months ago
- Structural variant toolkit for VCFs☆339Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆141Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- Various algorithms for analysing genomics data☆212Updated this week
- Count bases in BAM/CRAM files☆314Updated 3 years ago
- An overview of all nanopack tools☆233Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- ☆263Updated 3 weeks ago
- Genome browser and variant annotation☆295Updated last week
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 4 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆213Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 6 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- BEDOPS: high-performance genomic feature operations☆316Updated last year