mgymrek / lobstr-codeLinks
lobSTR: a short tandem repeat profiler for next generation sequencing data
☆52Updated last year
Alternatives and similar repositories for lobstr-code
Users that are interested in lobstr-code are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Structural variant merging tool☆50Updated 9 months ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- UCSC Nanopore☆43Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Simple convertor from bam to FASTQ☆26Updated 9 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- ☆28Updated 3 weeks ago
- An awk-like VCF parser☆56Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- Population-wide Deletion Calling☆35Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆80Updated 3 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago