mehrdadbakhtiari / adVNTRLinks
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
☆47Updated 10 months ago
Alternatives and similar repositories for adVNTR
Users that are interested in adVNTR are comparing it to the libraries listed below
Sorting:
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- ☆44Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Structural variant merging tool☆55Updated last year
- TIDDIT - structural variant calling☆77Updated 6 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆58Updated last week
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- for visual evaluation of read support for structural variation☆55Updated last year
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆36Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆36Updated 2 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- ☆51Updated 6 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- ☆81Updated 7 months ago
- ☆35Updated 4 years ago