mehrdadbakhtiari / adVNTRLinks
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
☆47Updated last year
Alternatives and similar repositories for adVNTR
Users that are interested in adVNTR are comparing it to the libraries listed below
Sorting:
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last week
- TIDDIT - structural variant calling☆77Updated 8 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Structural variant merging tool☆57Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 4 months ago
- ☆44Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Variant annotation and merging pipeline☆40Updated 4 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last month
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆35Updated 4 years ago
- Structural variant caller☆55Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- ☆83Updated 9 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ☆51Updated 6 years ago