Alternatives and similar repositories for GraphAlignmentViewer

Users that are interested in GraphAlignmentViewer are comparing it to the libraries listed below

• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• Illumina / RepeatCatalogs
  ☆21Updated 3 years ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆33Updated 2 weeks ago
• fakedrtom / SVAFotate
  ☆43Updated 11 months ago
• MeHelmy / princess
  ☆81Updated 5 months ago
• WGLab / RepeatHMM
  a hidden Markov model to infer simple repeats from genome sequences
  ☆37Updated 4 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆17Updated 2 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last month
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆65Updated 4 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 3 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated 11 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 9 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated last year
• mehrdadbakhtiari / adVNTR
  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
  ☆44Updated 8 months ago
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 7 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated 5 months ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• RahmanTeam / DECoN
  ☆53Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 weeks ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆22Updated last year