☆35Nov 1, 2021Updated 4 years ago
Alternatives and similar repositories for GraphAlignmentViewer
Users that are interested in GraphAlignmentViewer are comparing it to the libraries listed below
Sorting:
- A tool for visualizing alignments of reads in regions containing tandem repeats☆90Dec 19, 2023Updated 2 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- A suite of tools for detecting expansions of short tandem repeats☆85Jul 6, 2023Updated 2 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- ☆23Sep 21, 2021Updated 4 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 2 months ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A tool for estimating repeat sizes☆207Jan 30, 2024Updated 2 years ago
- Data and information about the Polaris study☆56Nov 18, 2019Updated 6 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- A tool for profiling long STRs from short reads☆105Apr 19, 2021Updated 4 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 10 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Detect novel (and reference) STR expansions from short-read data☆70Dec 6, 2025Updated 3 months ago
- A tool to genotype CYP2D6 with WGS data☆55Oct 14, 2023Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Toolkit for genome-wide analysis of tandem repeats☆60Feb 19, 2026Updated last month
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆132Dec 8, 2025Updated 3 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 3 months ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- ☆24Jul 29, 2025Updated 7 months ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 2 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 5 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆30Jan 24, 2022Updated 4 years ago
- ☆15Jul 21, 2022Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated 11 months ago
- ☆15Nov 22, 2022Updated 3 years ago