kgori / sigfit
Flexible Bayesian inference of mutational signatures
☆34Updated 2 years ago
Alternatives and similar repositories for sigfit:
Users that are interested in sigfit are comparing it to the libraries listed below
- DriverPower☆26Updated 2 months ago
- Utility functions for FACETS☆34Updated 11 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- R package wrapping bedtools☆38Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- Identify and correct invalid gene symbols☆59Updated 4 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 weeks ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 5 months ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆34Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 3 months ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated last week
- ☆33Updated 2 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated 7 months ago