kgori / sigfitLinks
Flexible Bayesian inference of mutational signatures
☆38Updated 2 years ago
Alternatives and similar repositories for sigfit
Users that are interested in sigfit are comparing it to the libraries listed below
Sorting:
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- A small R package to make sequencing read coverage plots in R.☆40Updated 2 weeks ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆30Updated 10 months ago
- a set of NGS pipelines☆24Updated last week
- DriverPower☆26Updated last year
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆33Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 3 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- ☆23Updated 4 years ago
- ☆39Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- Filter and prioritize fusion calls☆20Updated last year
- Utility functions for FACETS☆39Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- GTEx analysis scripts☆20Updated 8 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- R package wrapping bedtools☆44Updated 10 months ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 6 years ago