Alternatives and similar repositories for CNVpytor

Users that are interested in CNVpytor are comparing it to the libraries listed below

• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆258Updated 3 months ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆188Updated this week
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆161Updated 9 months ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆226Updated this week
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆217Updated 5 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆214Updated 2 months ago
• mortazavilab / TALON
  Technology agnostic long read analysis pipeline for transcriptomes
  ☆143Updated last year
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆268Updated 3 weeks ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆201Updated 4 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆200Updated last year
• FRED-2 / OptiType
  Precision HLA typing from next-generation sequencing data
  ☆199Updated last year
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆150Updated 2 years ago
• epi2me-labs / wf-human-variation
  ☆126Updated 3 weeks ago
• Illumina / ExpansionHunter
  A tool for estimating repeat sizes
  ☆193Updated last year
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆166Updated this week
• VanLoo-lab / ascat
  ASCAT R package
  ☆181Updated 2 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆359Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆151Updated 3 months ago
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆152Updated 3 years ago
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆145Updated 2 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆151Updated last week
• abyzovlab / CNVnator
  a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
  ☆223Updated 3 years ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated this week
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆146Updated this week
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆115Updated 2 months ago
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆141Updated 2 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆119Updated 8 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆254Updated 2 years ago
• epi2me-labs / wf-transcriptomes
  ☆95Updated 3 weeks ago