abyzovlab / CNVpytorLinks
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
☆210Updated 2 months ago
Alternatives and similar repositories for CNVpytor
Users that are interested in CNVpytor are comparing it to the libraries listed below
Sorting:
- A structural variation pipeline for short-read sequencing☆199Updated this week
- ☆145Updated last month
- Annotation and Ranking of Structural Variation☆276Updated 2 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆174Updated last year
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- Gene fusion detection and visualization☆131Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A tool for estimating repeat sizes☆200Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 10 months ago
- WisecondorX — An evolved WISECONDOR☆108Updated last month
- VarDict☆201Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆201Updated 4 months ago
- Jasmine: SV Merging Across Samples☆233Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆232Updated 3 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 7 months ago
- A tool for somatic structural variant calling using long reads☆158Updated 2 months ago
- ☆109Updated last month
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆83Updated 3 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- a lightweight bam file depth statistical tool☆159Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- Tools for plotting methylation data in various ways☆166Updated last month
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆166Updated 2 years ago