PacificBiosciences / trgt
Tandem repeat genotyping and visualization from PacBio HiFi data
☆114Updated 2 weeks ago
Alternatives and similar repositories for trgt
Users that are interested in trgt are comparing it to the libraries listed below
Sorting:
- Phased assembly variant caller☆115Updated 5 months ago
- Pangenome-based genome inference☆127Updated 3 weeks ago
- Collection of tools for the analysis of CpG data☆81Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆128Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆145Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Constructing a pangenome gene graph☆186Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆102Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- ☆111Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆105Updated 3 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- Variant calling tool for long-read sequencing data☆109Updated last month
- Research release basecalling models and configurations☆110Updated 10 months ago
- ☆56Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆110Updated 3 weeks ago
- De novo assembly from Oxford Nanopore reads.☆83Updated 2 weeks ago
- A list of software for pangenomics☆111Updated this week
- ☆46Updated 8 months ago
- Structural Variant Identification Method using Genome Assemblies☆114Updated 2 years ago
- SV detection tool for nanopore sequence reads☆91Updated last month
- Jasmine: SV Merging Across Samples☆213Updated 4 months ago
- Somatic structural variant caller for long-read data☆63Updated 2 weeks ago
- Simple pileup-based variant caller☆89Updated 2 weeks ago
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆74Updated 3 weeks ago
- accurate LiftOver tool for new genome assemblies☆125Updated 9 months ago