Alignment-free detection of structural variations and viral integrations in circulating tumor DNA
☆17Nov 11, 2021Updated 4 years ago
Alternatives and similar repositories for Aperture
Users that are interested in Aperture are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆16Aug 20, 2021Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 6 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 2 weeks ago
- ☆25Jan 18, 2022Updated 4 years ago
- Exome Copy Number Variation Polisher via Deep Learning☆18Jun 1, 2020Updated 6 years ago
- ☆11Oct 19, 2021Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- A tool for profiling long STRs from short reads☆107Apr 19, 2021Updated 5 years ago
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 9 months ago
- Data from the Human PanGenomics Project☆61Jul 15, 2021Updated 4 years ago
- CRISPR Indel, base edit analysis☆11Aug 1, 2020Updated 5 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆24Aug 25, 2025Updated 10 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ggDoubleHeat: A heatmap-like visualization tool☆16Jun 19, 2026Updated last week
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 3 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Five implementations of double linked lists to demonstrate generic data structures in C☆19Dec 19, 2019Updated 6 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- ☆19May 10, 2023Updated 3 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago