☆23Sep 21, 2021Updated 4 years ago
Alternatives and similar repositories for RepeatCatalogs
Users that are interested in RepeatCatalogs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for visualizing alignments of reads in regions containing tandem repeats☆90Dec 19, 2023Updated 2 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 3 months ago
- A tool for estimating repeat sizes☆208Jan 30, 2024Updated 2 years ago
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 3 years ago
- ☆35Nov 1, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Jul 21, 2022Updated 3 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 11 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆136Dec 8, 2025Updated 4 months ago
- Tandem repeat genotyping from long reads☆21Apr 5, 2026Updated last week
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆24Jul 29, 2025Updated 8 months ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆40Dec 15, 2025Updated 4 months ago
- Data and information about the Polaris study☆56Nov 18, 2019Updated 6 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆151Mar 25, 2026Updated 3 weeks ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Apr 2, 2026Updated last week
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for profiling long STRs from short reads☆106Apr 19, 2021Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- Scripts and utilities for analyzing tandem repeats (TRs).☆44Mar 31, 2026Updated 2 weeks ago
- ☆39Jul 3, 2025Updated 9 months ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆25Aug 20, 2020Updated 5 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 3 years ago
- Selective and Recursive local Assembler☆15Jan 31, 2022Updated 4 years ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago