bahlolab / exSTRaLinks
Expanded STR algorithm for Illumina sequencing data
☆23Updated 2 years ago
Alternatives and similar repositories for exSTRa
Users that are interested in exSTRa are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Unfazed by genomic variant phasing☆26Updated last year
- Tools for merging Tandem Repeat VCF files☆29Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- ☆35Updated 4 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- Population-wide Deletion Calling☆35Updated last month
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Updated 2 years ago
- ☆11Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆21Updated 2 months ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 2 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A pipeline for the identification of Compound Heterozygous Variants☆9Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- A transposition caller.☆10Updated last year