Oshlack / STRetchLinks
Method for detecting STR expansions from short-read sequencing data
☆63Updated 3 years ago
Alternatives and similar repositories for STRetch
Users that are interested in STRetch are comparing it to the libraries listed below
Sorting:
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆51Updated 6 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- UCSC Nanopore☆43Updated 6 years ago
- ☆45Updated 8 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 3 years ago
- ☆35Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆36Updated 2 months ago
- BigWig and BAM utilities☆97Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- ☆54Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago